📅 November 20 — 24, 2023
đź“Ť Centrum Wiskunde & Informatica (CWI), Amsterdam, the Netherlands
❯ Visit the event website for more details
The 3rd Annual Workshop of ALPACA — jointly with the 3rd Annual Workshop of PANGAIA — will be held at Centrum Wiskunde & Informatica (CWI) in Amsterdam from 20–24 November.
Invited Speakers
- Jasmijn Baaijens, TU Delft, the Netherlands
- Tobias Marschall, Heinrich Heine University DĂĽsseldorf, Germany
- Giulio Ermanno Pibiri, Ca’ Foscari University of Venice, Italy
- Teresa Przytycka, NCBI, USA
Registration
Registration is [closed]. Due to limited space, attendance is possible by invitation only.
Schedule
The programme of the workshop is as follows (2 ETC):
Large-scale pan-genomics
All timings shown are Central Europe Summer Time (CEST)
All timings shown are Central Europe Summer Time (CEST)
| Monday, November 20 | |
| 9:00 | Registration & Welcome (with coffee and tea) |
| 10:00 | Jasmijn Baaijens Invited lecture: Pangenome selection in metagenomics (Part A) Chair: Leen Stougie |
| 11:00 | Coffee break |
| 11:30 | Jasmijn Baaijens Invited lecture: Pangenome selection in metagenomics (Part B) |
| 12:30 | Lunch at CWI |
| 14:00 | ESR Presentations - Nicola Rizzo - Pengfei Wang - Francesco Andreace - Khodor Hannoush Chair: Veli Mäkinen |
| 16:00 | Coffee break |
| 16:30 | ESR Presentations - Luca Parmigiani - Raghuram Dandinasivara Rangaram - Konstantinn Bonnet Chair: Gabriel Valiente |
| 18:00 | Tomas Vinar and Brona Brejova LodElo meeting |
| 18:30 | Welcome reception |
| 19:30 | Dinner at Polder (pay yourself) |
| Tuesday, November 21 | |
| 9:00 | Coffee and tea |
| 10:00 | Tobias Marschall Invited lecture: (Part A) Chair: Nadia Pisanti |
| 11:00 | Coffee break |
| 11:30 | Tobias Marschall Invited lecture: (Part B) |
| 12:30 | Lunch at CWI |
| 14:00 | ESR Presentations - Jorge Avila - Njagi Mwaniki - EstĂ©ban Gabory - Tomáš SládeÄŤek Chair: Marcel KucharĂk |
| 16:00 | Coffee break |
| 16:30 | ALPACA Supervisory Board Meeting by Alexander Shoenhuth Closed meeting (Room: L0 16) |
| 17:30 | PANGAIA future by Paola Bonizzoni Closed meeting (Room: L0 16) |
| 18:30 | Start heading to the social dinner venue (IJ-kantine) |
| 19:30 | Social Dinner at IJ-kantine |
| Wednesday, November 22 | |
| 9:00 | Coffee and tea |
| 9:30 | PANGAIA results (3 talks) |
| 11:00 | Coffee break |
| 11:30 | Teresa Przytycka PANGAIA invited talk |
| 12:30 | Lunch at CWI |
| 14:00 | PANGAIA results (4 talks) |
| 16:00 | Coffee break |
| 16:30 | Giulio Pibiri PANGAIA invited talk: Indexing and compressing pangenomes with meta-colored compacted de Bruijn graphs |
| 17:30 | ALPACA/PANGAIA poster session with cheese & wine |
| 19:00 | End of day |
| Thursday, November 23 | |
| 9:00 | Coffee and tea |
| 10:00 | Luca Denti and Simone Ciccolella Hackathon |
| 11:00 | Coffee break |
| 11:30 | Luca Denti and Simone Ciccolella Hackathon |
| 12:30 | Lunch at Poesiat & Kater |
| 14:30 | Michelle Sweering, Solon Pissis, and Leen Stougie ALPACA soft-skills |
| 16:00 | Coffee break |
| 16:30 | ESR Presentations - Alessia Petescia - PĂo Sierra - Daria Frolova Chair: Giulio Pibiri |
| 17:30 | Tomas Vinar and Brona Brejova LodElo meeting |
| 18:30 | Open problems session with cheese & wine Newton room |
| 19:30 | End of day |
| Friday, November 24 | |
| 9:00 | Coffee and tea |
| 10:00 | Tomas Vinar and Brona Brejova LodElo meeting |
| 11:00 | Coffee break (cake!) |
| 11:30 | Tomas Vinar and Brona Brejova LodElo meeting |
| 12:30 | Lunch at CWI |
| 14:00 | Tomas Vinar and Brona Brejova LodElo meeting |
| 16:00 | Coffee break |
| 16:30 | Tomas Vinar and Brona Brejova LodElo meeting |
| 17:30 | Goodbye drinks |
Venue
The events will be held at Centrum Wiskunde & Informatica (CWI), the national research institute for mathematics and computer science in the Netherlands, which will also organize the events. CWI is located at the Amsterdam Science Park on the east side of Amsterdam.
All sessions will be hosted at the Euler room of the Amsterdam Science Park Congress center.
