1.

Teramo, Antonella; Binatti, Andrea; Ciabatti, Elena; Schiavoni, Gianluca; Tarrini, Giulia; Baril`a, Gregorio; Calabretto, Giulia; Vicenzetto, Cristina; Gasparini, Vanessa Rebecca; Facco, Monica; Petrini, Iacopo; Grossi, Roberto; Pisanti, Nadia; Bortoluzzi, Stefania; Falini, Brunangelo; Tiacci, Enrico; Galimberti, Sara; Semenzato, Gianpietro; Zambello, Renato

Defining TCRγδlymphoproliferative disorders by combined immunophenotypic and molecular evaluation Journal Article

In: Nature Communications, vol. 13, no. 1, pp. 3298, 2022, ISBN: 2041-1723.

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2.

Bonnet, Konstantinn; Marschall, Tobias; Doerr, Daniel

Constructing founder sets under allelic and non-allelic homologous recombination Unpublished

bioRxiv, 2022.

Abstract | Links | BibTeX

3.

Bernardini, Giulia; Gawrychowski, Paweł; Pisanti, Nadia; Pissis, Solon P.; Rosone, Giovanna

Elastic-Degenerate String Matching via Fast Matrix Multiplication Journal Article

In: SIAM Journal on Computing, vol. 51, no. 3, pp. 549–576, 2022.

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4.

Charalampopoulos, Panagiotis; Iliopoulos, Costas S.; Kociumaka, Tomasz; Pissis, Solon P.; Radoszewski, Jakub; Straszy'nski, Juliusz

Efficient Computation of Sequence Mappability Journal Article

In: Algorithmica, vol. 84, no. 5, pp. 1418–1440, 2022, ISBN: 1432-0541.

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5.

Luo, Xiao; Kang, Xiongbin; Schönhuth, Alexander

Strainline: full-length de novo viral haplotype reconstruction from noisy long reads Journal Article

In: Genome Biology, vol. 23, no. 1, pp. 29, 2022, ISSN: 1474-760X.

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6.

Gažiová, M.; Sládeček, T.; Pös, O.; Števko, M.; Krampl, W.; Pös, Z.; Hekel, R.; Hlavačka, M.; Kucharík, M.; Radvánszky, J.; Budiš, J.; Szemes, T.

Automated prediction of the clinical impact of structural copy number variations Journal Article

In: Scientific Reports, vol. 12, no. 1, pp. 555, 2022, ISSN: 2045-2322.

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7.

Rizzo, Nicola; Mäkinen, Veli

Linear Time Construction of Indexable Elastic Founder Graphs Inproceedings

In: Bazgan, Cristina; Fernau, Henning (Ed.): Combinatorial Algorithms, pp. 480–493, Springer International Publishing, Cham, 2022, ISBN: 978-3-031-06678-8.

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8.

Mwaniki, Njagi Moses; Garrison, Erik; Pisanti, Nadia

Fast Exact String to D-Texts Alignments Unpublished

arXiv, 2022.

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9.

Zhong, Haodi; Loukides, Grigorios; Pissis, Solon P.

Clustering sequence graphs Journal Article

In: Data & Knowledge Engineering, vol. 138, pp. 101981, 2022, ISSN: 0169-023X.

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10.

Cartes, Jorge Avila; Anand, Santosh; Ciccolella, Simone; Bonizzoni, Paola; Vedova, Gianluca Della

Accurate and Fast Clade Assignment via Deep Learning and Frequency Chaos Game Representation Journal Article

In: bioRxiv, 2022.

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11.

Rizzo, Nicola; Mäkinen, Veli

Indexable Elastic Founder Graphs of Minimum Height Inproceedings

In: Bannai, Hideo; Holub, Jan (Ed.): 33rd Annual Symposium on Combinatorial Pattern Matching (CPM 2022), pp. 19:1–19:19, Schloss Dagstuhl -- Leibniz-Zentrum für Informatik, Dagstuhl, Germany, 2022, ISSN: 1868-8969.

Abstract | Links | BibTeX

12.

Charalampopoulos, Panagiotis; Chen, Huiping; Christen, Peter; Loukides, Grigorios; Pisanti, Nadia; Pissis, Solon P.; Radoszewski, Jakub

Pattern Masking for Dictionary Matching Inproceedings

In: Ahn, Hee-Kap; Sadakane, Kunihiko (Ed.): 32nd International Symposium on Algorithms and Computation (ISAAC 2021), pp. 65:1–65:19, Schloss Dagstuhl -- Leibniz-Zentrum für Informatik, Dagstuhl, Germany, 2021, ISSN: 1868-8969.

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13.

Pisanti, Nadia

On-Line Pattern Matching on D-Texts (Invited Talk) Inproceedings

In: Gawrychowski, Paweł; Starikovskaya, Tatiana (Ed.): 32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021), pp. 3:1–3:2, Schloss Dagstuhl -- Leibniz-Zentrum für Informatik, Dagstuhl, Germany, 2021, ISSN: 1868-8969.

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14.

Conte, Alessio; Grossi, Roberto; Loukides, Grigorios; Pisanti, Nadia; Pissis, Solon P.; Punzi, Giulia

Beyond the BEST Theorem: Fast Assessment of Eulerian Trails Inproceedings

In: Bampis, Evripidis; Pagourtzis, Aris (Ed.): Fundamentals of Computation Theory, pp. 162–175, Springer International Publishing, Cham, 2021, ISBN: 978-3-030-86593-1.

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15.

Loukides, Grigorios; Pissis, Solon P.

Bidirectional String Anchors: A New String Sampling Mechanism Inproceedings

In: Mutzel, Petra; Pagh, Rasmus; Herman, Grzegorz (Ed.): 29th Annual European Symposium on Algorithms (ESA 2021), pp. 64:1–64:21, Schloss Dagstuhl -- Leibniz-Zentrum für Informatik, Dagstuhl, Germany, 2021, ISSN: 1868-8969.

Abstract | Links | BibTeX

16.

Charalampopoulos, Panagiotis; Kociumaka, Tomasz; Pissis, Solon P.; Radoszewski, Jakub

Faster Algorithms for Longest Common Substring Inproceedings

In: Mutzel, Petra; Pagh, Rasmus; Herman, Grzegorz (Ed.): 29th Annual European Symposium on Algorithms (ESA 2021), pp. 30:1–30:17, Schloss Dagstuhl -- Leibniz-Zentrum für Informatik, Dagstuhl, Germany, 2021, ISSN: 1868-8969.

Abstract | Links | BibTeX