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ALPACA ITN Project

ALPACA ITN Project

Algorithms for Pangenome Computational Analysis is an EU funded Innovative Training Network (ITN)

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    Author: dg

    Differential Analysis in the Context of Pan-Genome Graphs

    Differential Analysis in the Context of Pan-Genome Graphs

    Identifying significant differences between individual samples is a key problem in many areas, including diagnostics (tumor development), met- agenomic analysis (differences in sample composition), transcription analysis …

    dg November 13, 2020November 7, 2022 Jobs Read more

    Pan-genome graphs through founder sequences

    Pan-genome graphs through founder sequences

    The main goal is to apply and extend techniques from haplotyping literature to the construction of pan-genome graphs. Given a multiple alignment of pan-genomic references, the founder reconstruction problem is to find a small set…

    dg November 13, 2020November 7, 2022 Jobs Read more

    Efficiently merging compacted de Bruijn graphs

    Efficiently merging compacted de Bruijn graphs

    Compacted de Bruijn graphs are natural candidates for representing pan-genome graphs. The problem of constructing compacted de Bruijn graphs has been studied extensively, in both cases where the input is a (set of) genomes or raw …

    dg November 13, 2020November 7, 2022 Jobs Read more

    Graph-based reference to improve quantification of CNV detection in low-coverage data

    Graph-based reference to improve quantification of CNV detection in low-coverage data

    Growing insights in biomedical research indicates a substantial role of copy number variants (CNVs) in various diseases. CNVs are represented by duplicated or deleted parts of various lengths and can affect multiple genes or change gene dosage, lead to …

    dg November 13, 2020November 7, 2022 Jobs Read more

    Oxford Nanopore Technologies Ltd.

    Oxford Nanopore Technologies Ltd.
    dg November 10, 2020June 6, 2022 Partners Read more

    VU Amsterdam

    VU Amsterdam
    dg November 10, 2020June 6, 2022 Partners Read more

    Pendulum Therapeutics, Inc.

    Pendulum Therapeutics, Inc.
    dg November 10, 2020July 6, 2021 Partners Read more

    Commissariat à l’énergie atomique et aux énergies alternatives

    Commissariat à l’énergie atomique et aux énergies alternatives
    dg November 10, 2020July 6, 2021 Partners Read more

    BaseClear BV

    BaseClear BV
    dg November 10, 2020July 6, 2021 Partners Read more

    Suomen Punainen Risti

    Suomen Punainen Risti
    dg November 10, 2020June 6, 2022 Partners Read more
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    This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 956229

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